A flexible R package for nonnegative matrix factorization
نویسندگان
چکیده
منابع مشابه
A Projected Alternating Least square Approach for Computation of Nonnegative Matrix Factorization
Nonnegative matrix factorization (NMF) is a common method in data mining that have been used in different applications as a dimension reduction, classification or clustering method. Methods in alternating least square (ALS) approach usually used to solve this non-convex minimization problem. At each step of ALS algorithms two convex least square problems should be solved, which causes high com...
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In this paper, we propose a general formulation for kernel nonnegative matrix factorization with flexible kernels. Specifically, we propose the Gaussian nonnegative matrix factorization (GNMF) algorithm by using the Gaussian kernel in the framework. Different from a recently developed polynomial NMF (PNMF), GNMF finds basis vectors in the kernel-induced feature space and the computational cost ...
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Even though Nonnegative Matrix Factorization (NMF) in its original form performs rank reduction and signal compaction implicitly, it does not explicitly consider storage or transmission constraints. We propose a Frobenius-norm Quantized Nonnegative Matrix Factorization algorithm that is 1) almost as precise as traditional NMF for decomposition ranks of interest (with in 1-4dB), 2) admits to pra...
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In Nonnegative Matrix Factorization (NMF), a nonnegative matrix is approximated by a product of lower-rank factorizing matrices. Most NMF methods assume that each factorizing matrix appears only once in the approximation, thus the approximation is linear in the factorizing matrices. We present a new class of approximative NMF methods, called Quadratic Nonnegative Matrix Factorization (QNMF), wh...
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Nonnegative matrix factorization (NMF) is a powerful tool for data mining. However, the emergence of ‘big data’ has severely challenged our ability to compute this fundamental decomposition using deterministic algorithms. This paper presents a randomized hierarchical alternating least squares (HALS) algorithm to compute the NMF. By deriving a smaller matrix from the nonnegative input data, a mo...
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ژورنال
عنوان ژورنال: BMC Bioinformatics
سال: 2010
ISSN: 1471-2105
DOI: 10.1186/1471-2105-11-367